RED 0.0.3 – RNA Editing sites Detector

RED 0.0.3

:: DESCRIPTION

RED is a program to detect and visualize RNA editing events at genomic scale using next-generation sequencing data.

::DEVELOPER

RED team

:: SCREENSHOTS

RED

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • JRE

:: DOWNLOAD

 RED

:: MORE INFORMATION

Citation

RED: A Java-MySQL Software for Identifying and Visualizing RNA Editing Sites Using Rule-Based and Statistical Filters.
Sun Y, Li X, Wu D, Pan Q, Ji Y, Ren H, Ding K.
PLoS One. 2016 Mar 1;11(3):e0150465. doi: 10.1371/journal.pone.0150465.

Red – Inference of Epistatic Gene Networks

Red

:: DESCRIPTION

Red is a conceptually new probabilistic approach to gene network inference from quantitative interaction data

::DEVELOPER

BioLab , University of Ljubljana

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 Red

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Jun 15;30(12):i246-i254. doi: 10.1093/bioinformatics/btu287.
Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.
Zitnik M1, Župan B2.

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