Stampy 1.0.23
:: DESCRIPTION
Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It’s recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions. It can map reads from a highly divergent species to a reference genome for instance. Stampy achieves high sensitivity and speed by using a fast hashing algorithm and a detailed statistical model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Lunter and Goodson.
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads.
Genome Res. 2011. 21:936-939.