DHSMAP 2.0 / DHS-R – Fine-mapping of Qualitative Traits by use of Linkage Disequilibrium

DHSMAP 2.0

:: DESCRIPTION

DHSMAP (Decay of Haplotype Sharing MAPping Software) is a program that fine-maps qualitative traits by linkage disequilibrium.

::DEVELOPER

Andrew Strahs, Kenneth Wilder, Mary Sara McPeek

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
C Compier

:: DOWNLOAD

DHSMAP , Paralleled DHSMAP , DHS-R (modified version of DHSMAP)

:: MORE INFORMATION

Citation

McPeek and Strahs (1999),
Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping,
American Journal of Human Genetics 65:858-875.

Zhang J., Schneider D., Ober C., McPeek M. S.
“Multilocus linkage disequilibrium mapping by the decay of haplotype sharing with samples of related individuals”
(2005) Genetic Epidemiology, vol. 29, pp. 128-140

SimWalk 2.91 – Statistical Analysis of Qualitative Traits

SimWalk 2.91

:: DESCRIPTION

SimWalk2 is a statistical genetics computer application for haplotype, parametric linkage, non-parametric linkage (NPL), identity by descent (IBD) and mistyping analyses on any size of pedigree. SimWalk2 uses Markov chain Monte Carlo (MCMC) and simulated annealing algorithms to perform these multipoint analyses.

::DEVELOPER

Eric Sobel (simwalk@genetics.ucla.edu)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Mac / Linux

:: DOWNLOAD

SimWalk

:: MORE INFORMATION

Citation:

Sobel E, Papp JC, Lange K (2002)
Detection and integration of genotyping errors in statistical genetics.
American Journal of Human Genetics 70:496-508.

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