atBioNet – Network Analysis Tool for Genomics and Proteomics

atBioNet

:: DESCRIPTION

atBioNet is a free, user friendly, web-based network analysis tool for analyzing, visualizing, and interpreting genomics or proteomics data. The user supplies atBioNet with a list of proteins or genes, and atBioNet then creates an interactive graphical network model that can identify key functional modules. Pathway information from the Kyoto Encyclopedia of Genes and Genomes (KEGG) is directly integrated within atBioNet for enrichment analysis and assessment of the biological meaning of modules.

::DEVELOPER

the National Center for Toxicological Research (NCTR).

:: SCREENSHOTS

 REQUIREMENTS

  • Linux/Windows/MacOsX
  • Java

:: DOWNLOAD

 atBioNet

:: MORE INFORMATION

Citation

BMC Genomics. 2012 Jul 20;13(1):325. [Epub ahead of print]
atBioNet – an integrated network analysis tool for genomics and biomarker discovery.
Ding Y, Chen M, Liu Z, Ding D, Ye Y, Zhang M, Kelly R, Guo L, Su Z, Harris SC, Qian F, Ge W, Fang H, Xu X, Tong W.

 

BayesMix-MS – Analysis of Mass Spectrometry Proteomics data.

BayesMix-MS

:: DESCRIPTION

BayesMix-MS is a piece of computer software which can be used as a tool for the analysis of Mass Spectrometry Proteomics data.

::DEVELOPER

Kim-Anh Do, Ph.D.

:: SCREENSHOTS

N/A

: REQUIREMENTS

  • Windows

:: DOWNLOAD

 BayesMix-MS

:: MORE INFORMATION

Citation

Kim-Anh Do, Peter Mueller, Raj Bandyopadhya, Keith Baggerly (2008).
A Bayesian mixture model for protein biomarker discovery
Bayesian Modeling in Bioinformatics, Dey DK, Ghosh D, Mallick B (Eds), Chapman & Hall / CRC press

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