:: DESCRIPTION
ProtQuant is a Java-based tool for label-free protein quantification of Sequest output for the Microsoft Windows environment.
:: DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S24.
ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.
Bridges SM, Magee GB, Wang N, Williams WP, Burgess SC, Nanduri B.
:: DESCRIPTION
MSstats is an R package that provides tools for protein quantification in label-free and label-based LC-MS experiments and also SRM experiments based on a family of linear mixed-effects models as the integration of MSstats and SRMstats.
::DEVELOPER
Laboratory for Statistical Proteomics and Bioinformatics , Purdue University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 May 2. [Epub ahead of print]
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments.
Choi M1, Chang CY, Clough T, Broudy D, Killeen T, Maclean B, Vitek O.
BMC Bioinformatics. 2012;13 Suppl 16:S6. doi: 10.1186/1471-2105-13-S16-S6. Epub 2012 Nov 5.
Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs.
Clough T, Thaminy S, Ragg S, Aebersold R, Vitek O.
:: DESCRIPTION
MapQuant is a program that given large mass-spectrometry data, outputs quantitation for any organic species in the sample. The quantification involves several algorithms that are applied to the data after they are formatted into a data-structure called a two-dimensional map.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Leptos, KC, Sarracino, DA, Jaffe, JD, Krastins B, Church, GM (2006)
MapQuant: Open-Source Software for Large-Scale Protein Quantitation,
Proteomics. 2006 Mar;6(6):1770-82.
