:: DESCRIPTION
FreeContact is a protein residue contact predictor optimized for speed.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85.
FreeContact: fast and free software for protein contact prediction from residue co-evolution.
Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B
:: DESCRIPTION
RBO Aleph is a novel server for fully automated protein structure prediction. The server implements template-based modeling, protein contact prediction, and ab initio structure prediction.
::DEVELOPER
the Robotics and Biology Lab (RBO), Technische Universität Berlin.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
RBO Aleph: leveraging novel information sources for protein structure prediction.
Mabrouk M, Putz I, Werner T, Schneider M, Neeb M, Bartels P, Brock O.
Nucleic Acids Res. 2015 Apr 20. pii: gkv357.
:: DESCRIPTION
BND is a new balanced network deconvolution algorithm to identify optimized dependency matrix without limit on the eigenvalue range in the applied network systems. The algorithm was used to filter contact predictions of five widely-used co-evolution methods.
::DEVELOPER
Pattern Recognition and Bioinformatics Group (Shen Group)
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Proteins. 2015 Mar;83(3):485-96. doi: 10.1002/prot.24744. Epub 2015 Jan 24.
Improving accuracy of protein contact prediction using balanced network deconvolution.
Sun HP1, Huang Y, Wang XF, Zhang Y, Shen HB.
:: DESCRIPTION
PatchD calculates Information statistics for protein sequence alignments to find coevolving residues
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Regional covariation and its application for predicting protein contact patches
Xu, YongBai and Tillier, E. R. M,
PROTEINS: Structure, Function and Bioinformatics (2010) 78: 548-58
