Tag: profiles

StoatyDive v1.1.0 – Evaluation and Classification of Peak Profiles for Sequencing data

StoatyDive v1.1.0

:: DESCRIPTION

StoatyDive is a tool to evaluate and classify predicted peak profiles to assess the binding specificity of a protein to its targets. It can be used for sequencing data such as CLIP-seq or ChIP-Seq, or any other type of peak profile data.

::DEVELOPER

Bioinformatics Group Albert-Ludwigs-University Freiburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

StoatyDive

:: MORE INFORMATION

Citation

Heyl F, Backofen R.
StoatyDive: Evaluation and classification of peak profiles for sequencing data.
Gigascience. 2021 Jun 18;10(6):giab045. doi: 10.1093/gigascience/giab045. PMID: 34143874; PMCID: PMC8212874.

3TierMA – Three-Tiered Meta Analysis of Gene Expression Profiles of Co-morbid Diseases

3TierMA

:: DESCRIPTION

3TierMA is a three-tiered meta-analysis approach for studying the shared genetics of co-ocurring disease conditions in patients from their gene expression profiles.

::DEVELOPER

Bonnie Berger 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R
  • Python

:: DOWNLOAD

3TierMA

:: MORE INFORMATION

Citation:

Sumaiya Nazeen, Nathan P. Palmer, Bonnie Berger* and Isaac S. Kohane.
Integrative analysis of genetic datasets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities.
Genome Biology 17(1):228, 2016

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