PhylochipAnalyzer 1.0

:: DESCRIPTION

PhylochipAnalyzer is a Windows-program for the analysis of experiments with hierarchical probe-sets. It operates in two modes: first, the hierarchy of probes is defined interactively, second, the intensity data of a hybridized chip is loaded and analyzed according to the hierarchy. The program can export hierarchy trees to Newick-format and analyzed data to Excel. It contains a Delphi-script that makes it configurable with respect to different criteria for positive signals.

::DEVELOPER

Bioinformatics at AWI

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

PhylochipAnalyzer

:: MORE INFORMATION

Citation:

Metfies K, Borsutzki P, Gescher C, Medlin LK, Frickenhaus S
Phylochipanalyser — a program for analysing hierarchical probe sets
Molecular Ecology Resources (2008) 8, 99–102
doi:10.1111/j.1471-8286.2007.01927.x

AffyProbeMiner 1.0

:: DESCRIPTION

AffyProbeMiner is to re-define chip definition files (CDFs) for Affymetrix chips taking into account the most recent genomic sequence information. It re-groups probes in Affymetrix chips into probe sets according to a list of non-redundant verified complete coding sequences available in GenBank and RefSeq. Pre-computed CDFs for several chips are available for download.

DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

BLAT

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Tag: Probe set

PhylochipAnalyzer 1.0 – Analyse Hierarchical Probe sets

PhylochipAnalyzer 1.0

AffyProbeMiner 1.0 – Computing or Retrieving Accurately Redefined Affymetrix probe sets

AffyProbeMiner 1.0