The POPS program performs inference of ancestry distribution models. It uses a TESS-like interface to compute individual cluster membership and admixture proportions based on multilocus genotype data and their correlation with environmental and geographical variables.
PACCMIT-CDS is a software that finds potential microRNA targets within coding sequences by searching for conserved motifs that are complementary to the microRNA seed region and also overrepresented in comparison with a background model preserving both codon usage and amino acid sequence.
PACCMIT (Prediction of ACcessible and/or Conserved MIcroRNA Targets) is a flexible algorithm that filters potential miRNA binding sites in 3’UTR regions by their conservation, accessibility, or both, and then ranks the predictions according to the over-representation with respect to a random background based on a Markov model.
TransTermHP finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator.