DIVEIN – Analyze Phylogenies, Sequence Divergence, Diversity and Informative Sites

DIVEIN

:: DESCRIPTION

DIVEIN is a web service that performs automated maximum likelihood phylogenetic analyses of nucleotide and amino acid sequences. Starting with a set of aligned sequences

::DEVELOPER

Mullins Molecular Retrovirology Lab, University of Washington.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Biotechniques. 2010 May;48(5):405-8. doi: 10.2144/000113370.
DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites.
Deng W1, Maust BS, Nickle DC, Learn GH, Liu Y, Heath L, Kosakovsky Pond SL, Mullins JI.

SIMMAP 1.5.2 – StochastIc Mutational MApping on Phylogenies

SIMMAP 1.5.2

:: DESCRIPTION

SIMMAP is a post tree analysis GUI software package for stochastically mapping mutations on phylogenies.SIMMAPimplements stochastic mutational mapping using a wide range of models: 4 x 4 general reversible nucleotide models and standard Mk character models. SIMMAP allows addressing a variety of evolutionary questions. Specifically, questions about the number, type and placement of mutations on a phylogeny. In addition, tests of character correlation, positive selection, and ancestral states are available.

::DEVELOPER

Jonathan P Bollback

:: SCREENSHOTS

:: REQUIREMENTS

MacOsX

:: DOWNLOAD

SIMMAP

:: MORE INFORMATION

Citation

SIMMAP: stochastic character mapping of discrete traits on phylogenies.
Bollback JP.
BMC Bioinformatics. 2006 Feb 23;7:88.

PhyloQuart 1.4 – Reconstruct Phylogenies from Quartets

PhyloQuart 1.4

:: DESCRIPTION

PhyloQuart is a collection of programs aimed at estimating phylogenies from a quartet principle.

::DEVELOPER

Vincent Berry, and David Bryant

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Mac OsX

:: DOWNLOAD

PhyloQuart

:: MORE INFORMATION

Citation

Vincent Berry, and David Bryant
Faster reliable phylogenetic analysis.
RECOMB (1999) , p. 59-68.