GeoAssign 0.4.1

:: DESCRIPTION

GeoAssign is a Web based program assigns test individuals according to their genotypes or metric traits to groups (e.g. country of origin, population of origin) which are defined by reference individuals. Thus, the user needs to upload one data file for the test individuals (“Test file”) and one data file for the reference individuals (“Reference file”). The assignment is done using a nearest neighbour approach.

::DEVELOPER

Bernd Degen

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Degen B, Blanc-Jolivet C, Stierand K, Gillet E.
A nearest neighbour approach by genetic distance to the assignment of individual trees to geographic origin.
Forensic Sci Int Genet. 2017 Mar;27:132-141. doi: 10.1016/j.fsigen.2016.12.011. Epub 2016 Dec 29. PMID: 28073087.

Pedimap 1.2

:: DESCRIPTION

Pedimap is software designed to graphically present genetic information in pedigrees. This information can include phenotypic data, observed marker alleles, calculated Identity by Descent (IBD) probabilities, and (to be added) QTL (Quantitative Trait Loci) allele probabilities.

Pedimap is unique among other things in its capability to present some of this information in relation to genetic linkage maps, hence the name.

::DEVELOPER

Wageningen UR Plant Breeding

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

Pedimap

:: MORE INFORMATION

Citation
Voorrips RE, Bink MC, van de Weg WE.
Pedimap: Software for visualization of genetic and phenotypic data in pedigrees.
J Hered. 2012 Nov-Dec;103(6):903-7.

Tag: Phenotypic

GeoAssign 0.4.1 – Assignment of Origin using Genetic, Phenotypic and Geographic information

GeoAssign 0.4.1

Pedimap 1.2 – Genetic & Phenotypic Data Visualization

Pedimap 1.2