ORFer 1.3.2.2
:: DESCRIPTION
ORFer (Open Reading Frame Retrieval) reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number.The open reading frame corresponding to the protein sequences is extracted from the XML and displayed. ORFer has a database interface that allows for storing the retrieved sequences in a local SQL database.
::DEVELOPER
Konrad Büssow and Steve Hoffmann
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / Linux / MacOSX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
Konrad Büssow , Steve Hoffmann and Volker Sievert
ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
BMC Bioinformatics 2002, 3:40doi:10.1186/1471-2105-3-40