Tag: Neutral Model

ms 201811 – Generating Samples under Neutral Models of Genetic Variation

ms 201811

:: DESCRIPTION

ms is a program to generate samples under a variety of neutral models. The purpose of this program is to allow one to investigate the statistical properties of such samples, to evaluate estimators or statistical tests, and generally to aid in the interpretation of polymorphism data sets.

::DEVELOPER

Richard R. Hudson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 ms

:: MORE INFORMATION

Citation:

Richard R. Hudson (2002).
Generating samples under a Wright-Fisher neutral model of genetic variation.
Bioinformatics 18: 337-338.

SimMLST 1.0 – Simulation of MLST data under a Neutral Model

SimMLST 1.0

:: DESCRIPTION

SimMLST, a coalescent method to jointly simulate MLST data and the clonal genealogy that gave rise to the sample. Such simulations are useful to make interpretations about real datasets.Multi-locus sequence typing (MLST) is a widely used method of characterization of bacterial isolates. It has been applied to over 50,000 isolates in over 50 different species and its results are freely available from the pubMLST website.

::DEVELOPER

Xavier Didelot

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • C++ Compiler

:: DOWNLOAD

 SimMLST

:: MORE INFORMATION

Citation

Didelot, Lawson and Falush (2009)
SimMLST: simulation of multi-locus sequence typing data under a neutral model
Bioinformatics (2009) 25 (11): 1442-1444.

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