NAIBR
:: DESCRIPTION
NAIBR is a probabilistic algorithm for the identification of novel adjacencies from whole-genome linked-read sequencing data. NAIBR takes as input a barcoded and phased BAM processed with 10X Genomics’ “Long Ranger” pipeline and outputs a BEDPE file containing the predicted novel adjacencies with corresponding haplotypes, and log-likelihood scores.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Elyanow R, Wu HT, Raphael BJ.
Identifying structural variants using linked-read sequencing data.
Bioinformatics. 2018 Jan 15;34(2):353-360. doi: 10.1093/bioinformatics/btx712. PMID: 29112732; PMCID: PMC5860216.