Tigmint v1.2.4 – Correct Misassemblies using linked AND long reads

Tigmint v1.2.4

:: DESCRIPTION

Tigmint identifies and corrects misassemblies in genomes using linked (e.g. MGI’s stLFR, 10x Genomics Chromium) or long (e.g. Oxford Nanopore Technologies long reads) DNA sequencing reads.

::DEVELOPER

BC Cancer Canada’s Michael Smith Genome Sciences Centre

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Tigmint

:: MORE INFORMATION

Citation

Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I.
Tigmint: correcting assembly errors using linked reads from large molecules.
BMC Bioinformatics. 2018 Oct 26;19(1):393. doi: 10.1186/s12859-018-2425-6. PMID: 30367597; PMCID: PMC6204047.

misSEQuel v1.0beta – Misassembly Detection in Draft Genomes

misSEQuel v1.0beta

:: DESCRIPTION

misSEQuel is a software that enhances the quality of draft genomes by identifying misassembly errors and their breakpoints using paired-end sequence reads and optical mapping data.

::DEVELOPER

SEQ Development Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Java
  • Python
  • TWIN
  • BWA

:: DOWNLOAD

 misSEQuel

:: MORE INFORMATION

Citation

Misassembly detection using paired-end sequence reads and optical mapping data.
Muggli MD, Puglisi SJ, Ronen R, Boucher C.
Bioinformatics. 2015 Jun 15;31(12):i80-i88. doi: 10.1093/bioinformatics/btv262

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