Tag: miRNA-seq

miRge 3.0 0.0.9 – Rational and Efficient Approach to miRNA-seq

miRge 3.0 0.0.9

:: DESCRIPTION

miRge is a logical, ultrafast, small RNA-seq solution to process samples in a highly multiplexed fashion, resulting in dramatically decreased computational requirements when processing sets of samples in a single run.

::DEVELOPER

The Halushka Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 miRge

:: MORE INFORMATION

Citation

miRge – A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy.
Baras AS, Mitchell CJ, Myers JR, Gupta S, Weng LC, Ashton JM, Cornish TC, Pandey A, Halushka MK.
PLoS One. 2015 Nov 16;10(11):e0143066. doi: 10.1371/journal.pone.0143066.

mirPRo 1.1.4 – Tool for miRNA-seq Analysis

mirPRo 1.1.4

:: DESCRIPTION

miRPro is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in small RNA-seq data and provide useful functions such as IsomiR detection and “arm switching” identification, miRNA family quantification, and read cataloging in terms of genome annotation.

::DEVELOPER

Liang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 mirPRo

:: MORE INFORMATION

Citation

mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs.
Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA, Del Rio-Tsonis K, Liang C.
Sci Rep. 2015 Oct 5;5:14617. doi: 10.1038/srep14617.

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