fastHN – Fast Tool for Minimum Hybridization Networks

fastHN

:: DESCRIPTION

fastHN is a program for computing the hybridization number , a maximum acyclic agreement forest (MAAF) , or all maximum acyclic agreement forests (MAAFs) of two given phylogenetic trees. Once our programs find an MAAF, they also construct an optimal hybridization network .

::DEVELOPER

Chen Lab  & Lusheng Wang 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX

:: DOWNLOAD

 fastHN

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Jul 2;13:155.
A fast tool for minimum hybridization networks.
Chen ZZ, Wang L, Yamanaka S.

MEPSA 1.4 – Minimum Energy Pathway Analysis for Energy Landscapes

MEPSA 1.4

:: DESCRIPTION

MEPSA is a cross-platform user friendly tool for the analysis of energy landscapes from a transition state theory perspective.

::DEVELOPER

Molecular Modelling Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Python

:: DOWNLOAD

 MEPSA

:: MORE INFORMATION

Citation

MEPSA: minimum energy pathway analysis for energy landscapes.
Marcos-Alcalde I, Setoain J, Mendieta-Moreno JI, Mendieta J, Gómez-Puertas P.
Bioinformatics. 2015 Jul 31. pii: btv453.

Exit mobile version