d2Meta – Comparison of Metagenomic Samples Using Sequence Signatures

d2Meta

:: DESCRIPTION

d2Meta is intended to implement a program for alignment-free comparison of metagenomic samples of NGS data using  and .

::DEVELOPER

Fengzhu Sun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • C++ Compiler

:: DOWNLOAD

 d2Meta

:: MORE INFORMATION

Citation

BMC Genomics. 2012 Dec 27;13:730. doi: 10.1186/1471-2164-13-730.
Comparison of metagenomic samples using sequence signatures.
Jiang B, Song K, Ren J, Deng M, Sun F, Zhang X.

RAIDA 1.0 – Identifying differentially Abundant Features in Metagenomic Samples

RAIDA 1.0

:: DESCRIPTION

RAIDA (Ratio Approach for Identifying Differential Abundance) is a robust approach for identifying differentially abundant features in metagenomic samples across different conditions. It utilizes the ratio between features in a modified zero-inflated lognormal model.

::DEVELOPER

Statistical Bioinformatics Group

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • R

:: DOWNLOAD

 RAIDA

:: MORE INFORMATION

Citation:

A robust approach for identifying differentially abundant features in metagenomic samples.
Sohn MB, Du R, An L.
Bioinformatics. 2015 Mar 19. pii: btv165.

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