:: DESCRIPTION
PTree is a pattern-based, stochastic search method for maximum parsimony phylogenies.
::DEVELOPER
Algorithmic Bioinformatics, Heinrich-Heine-Universität Düsseldorf
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PeerJ. 2013 Jun 25;1:e89. doi: 10.7717/peerj.89. Print 2013.
PTree: pattern-based, stochastic search for maximum parsimony phylogenies.
Gregor I, Steinbrück L, McHardy AC.
:: DESCRIPTION
PRIMUS is a pedigree reconstruction algorithm that uses estimates of genome-wide identity by descent to reconstruct pedigrees consistent with observed genetic data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PRIMUS: Improving Pedigree Reconstruction using Mitochondrial and Y Haplotypes.
Staples J, Ekunwe L, Lange E, Wilson JG, Nickerson DA, Below JE.
Bioinformatics. 2015 Oct 29. pii: btv618
:: DESCRIPTION
SPIMAP is a phylogenetic reconstruction method specifically designed for reconstructing gene trees in the case of a known species tree.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction
Matthew D. Rasmussen and Manolis Kellis.
Mol Biol Evol (2011) 28 (1): 273-290.
:: DESCRIPTION
MECPM (Maximum Entropy Conditional Probability Moldeling) makes explicit and is determined by the interactions that confer phenotype-predictive power.MECPM achieved both improved sensitivity and specificity for identifying ground-truth markers and interactions.
::DEVELOPER
Computational Bioinformatics & Bio-imaging Laboratory (CBIL)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Miller, Zhang, Yu, Liu, Chen, Langefeld, Herrington, Wang (2009),
“An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions”
Bioinformatics (2009) 25 (19): 2478-2485.
