SNP2CAPS – SNP and INDEL Analysis Tool for CAPS Marker Development

SNP2CAPS

:: DESCRIPTION

SNP2CAPS facilitates the computational conversion of SNPs into CAPS markers. A simple algorithm involves the screening of multiply-aligned sequences for restriction sites followed by a selection pipeline that allows the deduction of CAPS candidates by the identification of putative alternative restriction sites.

::DEVELOPER

Thomas Thiel at the IPK-Gatersleben

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux/ MacOSX
Perl

:: DOWNLOAD

SNP2CAPS

:: MORE INFORMATION

Citation

T. Thiel, R. Kota, I. Grosse, N. Stein, and A. Graner.
SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development.
Nucleic Acids Research, 32(1):e5, 2004.

PEDAGREE 1.00 – Detect Autosomal Marker Mendelian Incompatibilities in Pedigree data

PEDAGREE 1.00

:: DESCRIPTION

PedAgree detects autosomal marker incompatibilities. PedAgree needs only pedigree file and doesn’t need locus file. The pedigree file have a very strict format because PedAgree need to distinguish markers from other variables.

::DEVELOPER

Christine Couiilault (kristin.c@free.fr)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux

:: DOWNLOAD

PEDAGREE

:: MORE INFORMATION

splitPed / splitRef – Split Pedigree file / Reference Haplotype into smaller files with subsets of markers

splitPed

:: DESCRIPTION

splitPed splits a pedigree file into smaller files with subsets of markers.

splitRef splits a reference haplotype file into smaller files with subsets of markers.

::DEVELOPER

Yun Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

splitPed , splitRef

:: MORE INFORMATION