Prob2plinkbig – Convert MACH probability files to PLINK dosage files Prob2plinkbig :: DESCRIPTION Use Prob2plinkbig to convert large MACH probability files to PLINK dosage files. ::DEVELOPER CTG (Complex Traits Genetics) Lab :: SCREENSHOTS N/A :: REQUIREMENTS Windows / Linux / MacOSX Perl :: DOWNLOAD Prob2plinkbig :: MORE INFORMATION
MACH 1.0 – Haplotyping, Genotype Imputation & Disease Association Analysis MACH 1.0 :: DESCRIPTION MACH (Markov Chain Haplotyping) is a Markov Chain based haplotyper. It can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals. ::DEVELOPER Abecasis Lab :: SCREENSHOTS Command Line :: REQUIREMENTS Windows / Mac / Linux :: DOWNLOAD MACH :: MORE INFORMATION Citation: Li Y, Willer CJ, Ding J, Scheet P and Abecasis GR (2006) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 34:816-834. If you decide to use MACH, please take a minute to register.
RegionalHapMapExtractor – Extract a Region from HapMapII for MaCH imputation RegionalHapMapExtractor :: DESCRIPTION RegionalHapMapExtractor is a software to extract a region from hapMapII for MaCH imputation ::DEVELOPER Yun Li :: SCREENSHOTS N/A :: REQUIREMENTS Linux / Windows / MacOsX Perl :: DOWNLOAD RegionalHapMapExtractor :: MORE INFORMATION