:: DESCRIPTION
Protein-DNA Interface Alignment Software is an algorithm to perform interface alignment between any two protein-DNA complexes based on their corresponding PDB files.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Siggers, T.W., Silkov, A & Honig, B (2005)
Structural Alignment of Protein-DNA Interfaces: Insights into the Determinants of Binding Specificity.
JMB 345(5):1027-1045.
:: DESCRIPTION
ISIM interface is a simple Java graphical user interface for running the program ISIM. ISIM is package that simulates the thermodynamic ensemble of ions around a macromolecule using a grand canonical Monte Carlo scheme and simple hard sphere ion models. It is meant to provide an alternative mechanism to mean field approaches to allow the calculation of ion distributions around a highly charged molecule using a simple model that takes into account ion-ion correlations and steric interactions.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Andreas Vitalis, Nathan A. Baker, J. Andrew McCammon (2004)
ISIM: A Program for Grand Canonical Monte Carlo Simulations of the Ionic Environment of Biomolecules.
Molecular Simulation 30(1): 45-61 (2004)
:: DESCRIPTION
WINIPAUP (Windows Interface for PAUP) is an interface allowing the creation of NEXUS files including the data and the commands necessary to the realization of analyzes in PAUP software (D. SWOFFORD).WINIPAUP allows the importation of sequences (nucleotidic and proteic), discrete data, distances matrix, phylogenetic trees and NEXUS files.Moreover the software allows the creation of files which, carried out in PAUP, provide results files usable by MODELTEST software (D. POSADA).
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
If you download and use this software please register to be informed for new release and modifications.
