BioLegend Tools for iPad also includes BioLegend pathway posters, an antibody usage calculator, and a lab timer. What’s more it is optimized for the iPad for speed and clarity.
WIST is a template-based toolkit to facilitate rapid LIMS (Laboratory Information Management System) development. WIST is designed to create LIMS modules with a web-based front end and a SQL database back end, along with a repository for larger data objects (e.g., files) that are impractical to store in SQL tables.
::DEVELOPER
The VIMSS (Virtual Institute of Microbial Stress and Survival)
iHOP provides fast, accurate, comprehensive, and up-to-date summary information on more than 80,000 biological molecules by automatically extracting key sentences from millions of PubMed documents.
::DEVELOPER
Robert Hoffmann
:: SCREENSHOTS
N/A
:: REQUIREMENTS
Web Browser
:: DOWNLOAD
No
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W21-6. Epub 2007 May 7. iHOP web services.
Fernández JM, Hoffmann R, Valencia A.
PileLine is a flexible command-line toolkit for efficient handling, filtering, and comparison of genomic position (GP) files produced by next-generation sequencing experiments (i.e. pileup, BED,GFF, or VCF files). PileLine is designed to be memory efficient by performing on-disk operations over sorted GP files directly.
PileLine GUI is a front-end of the PileLine toolkit, plus a genome browser.
ENDOG‘s Primary functions are the computation of the individual inbreeding (F) (Wright, 1931) and the average relatedness (AR) (Gutiérrez et al., 2003; Goyache et al., 2003) coefficients. Additionally, users can compute with ENDOG useful parameters in population genetics such as that described for Biochard et al. (1997) for the number of ancestors explaining genetic variability or those proposed by Robertson (1953) and Vassallo et al. (1996) for the genetic importance of the herds. ENDOG also can compute F statistics (Wright, 1978) from genealogical information following Caballero and Toro (2000; 2002). Moreover, the present version of ENDOG calculates effective population size following different methodologies including regression approaches and particularly the recently proposed realized effective population size from individual increase in inbreeding (Gutiérrez et al., 2008), modified to account for avoidance of self-fertilization (Gutiérrez et al., 2009).
MICE (Mouse Information and Classification Entity) is a program aimed at facilitating the monitoring of animals in their facility. It consists of a virtual facility in which scientists can perform all the tasks done in the real world (i.e., receiving animals, breeding, etc…). Each animal is recorded with all associated information (birth date, cage number, ID number, tail analysis number, parents, genetic status, genetic background and more), allowing for reliable tracking. Animals can be identified, grouped, sorted, moved…, according to any parameter of interest to the scientist, including associated comments. Crossings are automatically processed by the program, which determines the new genetic background, generation number, cage location and due date.
MICE reminds the user when births are expected, and entering the newborn animals only requires a few clicks (of the mouse!). The genealogy of each animal can be determined in two different ways, including a visual tree from which each ancestor’s information can be retrieved.