Tag: Image Segmentation

GemIdent 2.1 – Statistical Image Segmentation System

GemIdent 2.1

:: DESCRIPTION

GemIdent is an interactive program that identifies regions of interest in images. It is specifically designed for color segmentation in images with few colors, where the objects of interest look alike with small variation.

::DEVELOPER

Dr. Adam Kapelner in the lab of Dr. Peter Lee under the tutelage of Professor Susan Holmes.

:: SCREENSHOTS

GemIdent

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 GemIdent

:: MORE INFORMATION

Citation

J Stat Softw. 2009 Jun 1;30(10). pii: i10.
An Interactive Java Statistical Image Segmentation System: GemIdent.
Holmes S, Kapelner A, Lee PP.

Costanza 1.0 – ImageJ Plugin for Image Segmentation & Analyzing Stacks

Costanza 1.0

:: DESCRIPTION

Costanza (COnfocal STack ANalyZer Application) is a Image segmentation software developed for 3D confocal data. Implemented in Java as a plugin to ImageJ.

Costanza is used to segment compartments (cells) in a stack and to extract quantitative data for the extracted compartments, including intensities from a second stack.

::DEVELOPER

Michael Green, Pawel Krupinski, Pontus Melke, Patrik Sahlin, Henrik Jönsson
Computational Biology & Biological Physics, Lund University

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Costanza ; userguide.pdf.

:: MORE INFORMATION

Source code is available upon request (henrik at thep.lu.se).

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