ChemSpot 2.0 – A Hybrid System for Chemical named Entity Recognition

ChemSpot 2.0

:: DESCRIPTION

ChemSpot is a set of tools for named entity recognition and classification of chemicals in natural language texts, including trivial names, abbreviations, molecular formulas and IUPAC entities.

::DEVELOPER

Wissensmanagement in der Bioinformatik

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Java

:: DOWNLOAD

 ChemSpot

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Jun 15;28(12):1633-40. doi: 10.1093/bioinformatics/bts183. Epub 2012 Apr 12.
ChemSpot: a hybrid system for chemical named entity recognition.
Rocktäschel T1, Weidlich M, Leser U.

CHARON 1.0 – Language for Modular Specification of Interacting Hybrid System

CHARON 1.0

:: DESCRIPTION

CHARON is a language for modular specification of interacting hybrid systems based on the notions of agent and mode. For hierarchical description of the system architecture, CHARON provides the operations of instantiation, hiding, and parallel composition on agents, which can be used to build a complex agent from other agents. The discrete and continuous behaviors of an agent are described using modes. For hierarchical description of the behavior of an agent, CHARON supports the operations of instantiation and nesting of modes. Furthermore, features such as weak preemption, history retention, and externally defined Java functions, facilitate the description of complex discrete behavior. Continuous behavior can be specified using differential as well as algebraic constraints, and invariants restricting the flow spaces, all of which can be declared at various levels of the hierarchy. The modular structure of the language is not merely syntactic, but also reflected in the semantics so that it can be exploited during analysis.

::DEVELOPER

Biocomputation Group at the University of Pennsylvania

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • JAVA

:: DOWNLOAD

CHARON ; manual

:: MORE INFORMATION

If you have questions. Please contact the friendly folks at the CHARON help desk (charon-help@cis.upenn.edu).

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