Tag: high-throughput Sequence

Kraken 13-274 – Tools for Quality Control and Analysis of High-throughput Sequence data

Kraken 13-274

:: DESCRIPTION

Kraken consists of 3 tools ( Reaper ,  Tally  and  Sequence Imp ) designed to streamline the analysis of next-generation sequencing data. Although designed with small RNA sequence analysis in mind the tools can be used to address issues facing next-generation sequencing in general.

::DEVELOPER

Enright Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • MacOsX /  Linux

:: DOWNLOAD

 Kraken

:: MORE INFORMATION

Citation:

Kraken: A set of tools for quality control and analysis of high-throughput sequence data
Matthew P.A. Davis, Stijn van Dongen, Cei Abreu-Goodger, Nenad Bartonicek and Anton J. Enright
Methods. 2013 Sep 1;63(1):41-9. doi: 10.1016/j.ymeth.2013.06.027. Epub 2013 Jun 29.

F-Seq 1.84 – Feature Density Estimator for High-Throughput Sequence Tags

F-Seq 1.84

:: DESCRIPTION

F-Seq is a software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser.

::DEVELOPER

Furey Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Java

:: DOWNLOAD

 F-Seq

:: MORE INFORMATION

Citation

Bioinformatics. 2008 Nov 1;24(21):2537-8. doi: 10.1093/bioinformatics/btn480. Epub 2008 Sep 10.
F-Seq: a feature density estimator for high-throughput sequence tags.
Boyle AP, Guinney J, Crawford GE, Furey TS.

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