GPU MrBayes 3.2.6 – MrBayes on a Graphics Processing Unit

GPU MrBayes 3.2.6

:: DESCRIPTION

GPU MrBayes is a modified version of MrBayes that enables running Metropolis coupled  Markov  chain Monte Carlo (MC)^3 sampling on a Graphics Processing Unit (GPU).

::DEVELOPER

Nankai-Baidu Joint Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GPU

:: DOWNLOAD

 GPU MrBayes

:: MORE INFORMATION

Citation:

GPU MrBayes V3.1: MrBayes on graphics processing units for protein sequence data.
Pang S, Stones RJ, Ren MM, Liu XG, Wang G, Xia H, Wu HY, Liu Y, Xie Q.
Mol Biol Evol. 2015 May 26. pii: msv129.

Bioinformatics. 2011 May 1;27(9):1255-61. doi: 10.1093/bioinformatics/btr140. Epub 2011 Mar 16.
MrBayes on a graphics processing unit.
Zhou J1, Liu X, Stones DS, Xie Q, Wang G.

BarraCUDA 0.7.0 – Short Read Sequence Aligner using Graphics Processing Units

BarraCUDA 0.7.0

:: DESCRIPTION

BarraCUDA is a GPGPU sequence alignment software that is based on BWA, to accelerate the alignment of sequencing reads generated by these instruments to a reference DNA sequence.

::DEVELOPER

the Metabolic Research Laboratories

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • NVIDIA CUDA

:: DOWNLOAD

 BarraCUDA

:: MORE INFORMATION

Citation

BMC Res Notes. 2012 Jan 13;5:27. doi: 10.1186/1756-0500-5-27.
BarraCUDA – a fast short read sequence aligner using graphics processing units.
Klus P, Lam S, Lyberg D, Cheung MS, Pullan G, McFarlane I, Yeo GSh, Lam BY.

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