Tag: Genotyper

Bis-SNP 0.82.2 – Bisulfite Space Genotyper & Methylation Caller

BisSNP 0.82.2

:: DESCRIPTION

BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping and accurate DNA methylation calling in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq, RRBS and any other bisulfite treated sequencing) with Illumina directional library protocol.

::DEVELOPER

USC Epigenome Center

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • java
  • perl 

:: DOWNLOAD

 Bis-SNP

:: MORE INFORMATION

Citation

Genome Biol. 2012 Jul 11;13(7):R61. [Epub ahead of print]
Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data.
Liu Y, Siegmund KD, Laird PW, Berman BP.

STR_ConvertFormats 20120306 – Transform STR typing data to Genotyper table format

STR_ConvertFormats 20120306

:: DESCRIPTION

STR_ConvertFormats is an Excel-based tool developed to transform STR typing data from tables where every row contains information from a single locus (e.g., GeneMapperID output format) to a format where every row contains all typing results for a single sample (e.g., Genotyper table format).

::DEVELOPER

Dave Duewer at National Institute of Standards and Technolog

:: SCREENSHOTS

:: REQUIREMENTS

  • Excel

:: DOWNLOAD

STR_ConvertFormats

:: MORE INFORMATION

Citation

See description in Becky Hill presentation at the Expert Systems Workshop held in conjunction with the 2nd Annual Present and Future Technological Advances in Human Identification Conference (Roanoke, VA), March 27, 2006, “NIST Experience with FSS-i3 software“

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