AVIA 3 – Analysis of Genomic Variants and Genes

AVIA 3

:: DESCRIPTION

AVIA is a web based annotation and visualization workflow that allow users with variation data to easily get more information about their specific mutations without having to search multiple websites or databases.

::DEVELOPER

AVIA team

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

AVIA v2.0: annotation, visualization, and impact analysis of genomic variants and genes.
Vuong H, Che A, Ravichandran S, T Luke B, R Collins J, S Mudunuri U.
Bioinformatics. 2015 Apr 9. pii: btv200.

TrioVis 20130409 – Visualization approach for Filtering Genomic Variants of Parent-child Trios

TrioVis 20130409

:: DESCRIPTION

TrioVis is a visualisation tool developed to assist filtering on coverage and variant frequency for genomic variants from exome sequencing of parent-child trios. It organises the variant data by grouping each variant based on the laws of Mendelian inheritance. Taking three Variant Call Format (VCF) files as input, the tool provides a user interface to test different coverage thresholds (i.e. different levels of stringency), to find the optimal threshold values, and to gain insights into the global effects of filtering.

::DEVELOPER

Bioinformatics Research Group, Belgium

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

TrioVis

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jul 15;29(14):1801-2. doi: 10.1093/bioinformatics/btt267. Epub 2013 May 8.
TrioVis: a visualization approach for filtering genomic variants of parent-child trios.
Sakai R, Sifrim A, Vande Moere A, Aerts J.

VarioWatch 20171116 – Providing large-scale and comprehensive Annotations on human Genomic Variants in the Next Generation Sequencing era

VarioWatch 20171116

:: DESCRIPTION

VarioWatch is a functional variant and disease gene mining browser for association study

::DEVELOPER

VarioWatch team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W76-81. doi: 10.1093/nar/gks397. Epub 2012 May 22.
VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era.
Cheng YC1, Hsiao FC, Yeh EC, Lin WJ, Tang CY, Tseng HC, Wu HT, Liu CK, Chen CC, Chen YT, Yao A.