Tag: Genomic Coordinate

Segtor 1.3 – Annotation of Genomic Coordinates and Single Nucleotide Variations using Segment Trees

Segtor 1.3

:: DESCRIPTION

Segtor is a software tool to annotate large sets of genomic coordinates, intervals, SNVs, indels and translocations with respect to known genes.

::DEVELOPER

Segtor team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Perl

:: DOWNLOAD

Segtor

Citation:

PLoS One. 2011;6(11):e26715. doi: 10.1371/journal.pone.0026715. Epub 2011 Nov 1.
Segtor: rapid annotation of genomic coordinates and single nucleotide variations using segment trees.
Renaud G, Neves P, Folador EL, Ferreira CG, Passetti F.

SnpTracker 0.1 – Extract the latest version rsID and Genomic Coordinates of SNPs given any version of rs ID(s)

SnpTracker 0.1

:: DESCRIPTION

SnpTracker is a small tool to extract the latest version rsID and genomic coordinates of SNPs given any version of rs ID(s)

::DEVELOPER

Precision Medicine Genomics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

 SnpTracker

:: MORE INFORMATION

Citation

SNPTracker: A Swift Tool for Comprehensive Tracking and Unifying dbSNP rsIDs and Genomic Coordinates of Massive Sequence Variants.
Deng JE, Sham PC, Li MX.
G3 (Bethesda). 2015 Nov 19. pii: g3.115.021832. doi: 10.1534/g3.115.021832.

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