Tag: Genome-wide analysis

TRTools v4.0.0 – Toolkit for Genome-wide analysis of Tandem Repeats

TRTools v4.0.0

:: DESCRIPTION

TRTools contains a variety of utilities for working with TR genotype files generated by HipSTR, GangSTR, and other repeat genotypers.

::DEVELOPER

Gymrek Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

TRTools

:: MORE INFORMATION

Citation

Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M.
TRTools: a toolkit for genome-wide analysis of tandem repeats.
Bioinformatics. 2021 May 5;37(5):731-733. doi: 10.1093/bioinformatics/btaa736. PMID: 32805020; PMCID: PMC8097685.

BioMet Toolbox 2.0 – Genome-wide analysis of Metabolism and Omics data

BioMet Toolbox 2.0

:: DESCRIPTION

The BioMet ToolBox is a web-based resource for exploiting the capabilites of metabolic networks described in genome scale models using flux analysis and random sampling, powered by RAVEN, gene set analysis and basic microarray analysis using PIANO, thereby providing an integrated analysis to identify coregulated subnetwork structures within the metabolic network and also for identifying statistically significant gene sets enabling biological interpretation.

:: DEVELOPER

Systems & Synthetic Biology – SYSBIO, Chalmers University of Technology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.
Garcia-Albornoz M, Thankaswamy-Kosalai S, Nilsson A, V?remo L, Nookaew I, Nielsen J.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W175-81. doi: 10.1093/nar/gku371.

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