WordCluster – Detect Clusters of DNA Word and Genome Elements

WordCluster

:: DESCRIPTION

WordCluster is an algorithm to detect clusters of DNA words (k-mers), or any other genomic element, based on the distance between consecutive copies and an assigned statistical significance.

::DEVELOPER

The group of computational genomics and bioinformatics at Granada University (Spain)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Algorithms Mol Biol. 2011 Jan 24;6:2. doi: 10.1186/1748-7188-6-2.
WordCluster: detecting clusters of DNA words and genomic elements.
Hackenberg M, Carpena P, Bernaola-Galván P, Barturen G, Alganza AM, Oliver JL.

GenomeCluster 20140824 – Clusters of Genome Elements

GenomeCluster 20140824

:: DESCRIPTION

GenomeCluster is an algorithm which able to detect clusters of whatever genome element identified by chromosome coordinates.

::DEVELOPER

The group of Computational Genomics and Bioinformatics at Granada University (Spain)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 GenomeCluster

:: MORE INFORMATION

Citation

DNA clustering and genome complexity.
Dios F, Barturen G, Lebrón R, Rueda A, Hackenberg M, Oliver JL.
Comput Biol Chem. 2014 Aug 23. pii: S1476-9271(14)00090-5. doi: 10.1016/j.compbiolchem.2014.08.011

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