MAINMAST 1.0 – MAINchain Model trAcing using Spanning Tree from a EM map

MAINMAST 1.0

:: DESCRIPTION

MAINMAST is a de novo modeling protocol to build an entire protein 3D model directly from near-atomic resolution EM map.

::DEVELOPER

Kihara Bioinformatics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

MAINMAST

:: MORE INFORMATION

Citation

De novo main-chain modeling with MAINMAST in 2015/2016 EM Model Challenge.
Terashi G, Kihara D.
J Struct Biol. 2018 Nov;204(2):351-359. doi: 10.1016/j.jsb.2018.07.013.

iMODFIT 1.51 – Fitting of Atomic Structures into EM maps based on iMOD

iMODFIT 1.51

:: DESCRIPTION

iMODFIT is an efficient tool for flexible fitting of atomic structures into EM maps based on Normal Mode Analysis in internal Coordinates.

::DEVELOPER

The Structural Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 iMODFIT

:: MORE INFORMATION

Citation

J Struct Biol. 2013 Aug 30. pii: S1047-8477(13)00216-5. doi: 10.1016/j.jsb.2013.08.010.
iMODFIT: Efficient and robust flexible fitting based on vibrational analysis in internal coordinates.
Lopéz-Blanco JR, Chacón P.

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