CMDS 1.0 – Identify Recurrent DNA Copy Number Changes

CMDS 1.0

:: DESCRIPTION

CMDS (Correlation Matrix Diagonal Segmentation ) is a R & C programs for DNA copy number analysis: current copy number aberration indentification in multiple samples (with no need of single-sample calling). Developed for a quick analysis of high resolution and large population data.

::DEVELOPER

Qunyuan Zhang  (qunyuan@wustl.edu)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  CMDS

:: MORE INFORMATION

Citation:

CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data
Qunyuan Zhang, Li Ding, David E. Larson, Daniel C. Koboldt, Michael D. McLellan, Ken Chen, Xiaoqi Shi, Aldi Kraja, Elaine R. Mardis, Richard K. Wilson, Ingrid B. Boreki and Michael A. Province
Bioinformatics (2009)doi: 10.1093/bioinformatics/btp

SNPExpress – Visualization of Gene Expression, DNA copy number and Genotype data

SNPExpress

:: DESCRIPTION

SNPExpress is a tool to combine visualization of gene expression, DNA copy number and genotype data.

::DEVELOPER

 The Department of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 SNPExpress

:: MORE INFORMATION

Citation

BMC Genomics. 2008 Jan 25;9:41.
SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels.
Sanders MA, Verhaak RG, Geertsma-Kleinekoort WM, Abbas S, Horsman S, van der Spek PJ, Löwenberg B, Valk PJ.

Exit mobile version