Odefy 1.20 – From Discrete to Continuous Models

Odefy 1.20

:: DESCRIPTION

Odefy is a MATLAB- and Octave-compatible toolbox for the automated transformation of Boolean models into systems of ordinary differential equations.

::DEVELOPER

Institute of Computational Biology, German Research Center for Environmental Health (GmbH)

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Odefy

:: MORE INFORMATION

Citation

Krumsiek J, Poelsterl S, Wittmann DM, Theis FJ.
Odefy – From discrete to continuous models.
BMC Bioinformatics. 2010, 11:233.

:: DESCRIPTION

conStruct (continuous Structure) is a statistical tool for modeling continuous and discrete population genetic structure.

::DEVELOPER

the Bradburd Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

conStruct

:: MORE INFORMATION

Citation

Bradburd GS, Coop GM, Ralph PL.
Inferring Continuous and Discrete Population Genetic Structure Across Space.
Genetics. 2018 Sep;210(1):33-52. doi: 10.1534/genetics.118.301333. Epub 2018 Jul 19. PMID: 30026187; PMCID: PMC6116973.

:: DESCRIPTION

PetriScape is a tool for discrete Petri net simulation of biological networks in Cytoscape.

::DEVELOPER

Baumbach lab

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

PetriScape

:: MORE INFORMATION

Citation

J Integr Bioinform. 2016 Jun 4;13(1):284. doi: 10.2390/biecoll-jib-2016-284.
PetriScape – A plugin for discrete Petri net simulations in Cytoscape.
Almeida D, Azevedo V, Silva A, Baumbach J.