:: DESCRIPTION
BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.
Ghaffarizadeh A, Friedman SH, Macklin P.
Bioinformatics. 2015 Dec 12. pii: btv730.
:: DESCRIPTION
MAPSD is a multi-omic signal diffusion algorithm designed to identify the disease susceptibility scores in unknown genes (or proteins) in complex and polygenic diseases such as schizophrenia.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Doostparast Torshizi A, Duan J, Wang K.
Cell type-specific proteogenomic signal diffusion for integrating multi-omics data predicts novel schizophrenia risk genes.
bioRxiv, 2020.
:: DESCRIPTION
Redi simulates biochemical systems at the mesoscopic scale of interaction
::DEVELOPER
The Microsoft Research – University of Trento Centre for Computational and Systems Biology
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
P. Lecca, A. Ihekwaba, L. Dematte’, C.
Stochastic simulation of the spatio-temporal dynamics of reaction-diffusion systems: the case for the bicoid gradient.
In Journal of Integrative Bioinformatics, 7, 2010
:: DESCRIPTION
Diffusion Simulator is a simple diffusion random walk simulation. Run single trajectories or many. Compute the average distancetraveled in the x and y direction in addition to the Euclidean distance.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
