Tuftsviewer / Molli 0.99 – Cross Platform Open Source PDB Viewer

Tuftsviewer / Molli 0.99

:: DESCRIPTION

TuftsViewer is an open source program that allows the visualization, rotation and coordinated viewing of multiple 3D protein molecules on the 2D screen.

TuftsViewer has been renamed to Molli. Molli is an open source cross-platform protein structure viewer based on the OpenGL and wxWidgets libraries.

::DEVELOPER

Cowen Group

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Linux/MacOsX

:: DOWNLOAD

Molli

:: MORE INFORMATION

Citation:

Matt Menke, Sara Su, Connor Gramazio, Caitlin Crumm, Daniela Extrum-Fernandez and Lenore Cowen,
TuftsViewer: An Intuitive Interface for viewing 3D Protein Structures,
Proceedings of ISMB 3DSIG, p. 24.

InCroMAP 1.5 – Integrated Analysis of Cross-platform MicroArray and Pathway data

InCroMAP 1.5

:: DESCRIPTION

InCroMAP is a powerful tool for pathway-based analysis or visualization of heterogeneous cross-platform microarray datasets (mRNA, miRNA, DNA methylation and protein).

::DEVELOPER

InCroMAP TEam

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / MacOsX
Java

:: DOWNLOAD

InCroMAP

:: MORE INFORMATION

Citation:

InCroMAP: integrated analysis of cross-platform microarray and pathway data.
Wrzodek C, Eichner J, Büchel F, Zell A.
Bioinformatics. 2013 Jan 16.

CPTRA 20090207 – Cross Platform Transcriptome Analysis

CPTRA 20090207

:: DESCRIPTION

The CPTRA package is for analyzing transcriptome sequencing data from different sequencing platforms. It combines advantages of 454, Illumina GAII, or other platforms and can perform sequence tag alignment and annotation, expression quantification tasks.

::DEVELOPER

Joshua Yuan lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Linux/ Windows/ MacOsX
Python

:: DOWNLOAD

CPTRA

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S16. doi: 10.1186/1471-2105-10-S11-S16.
Novel software package for cross-platform transcriptome analysis (CPTRA).
Zhou X, Su Z, Sammons RD, Peng Y, Tranel PJ, Stewart CN Jr, Yuan JS.

Jamberoo 11 – Cross-Platform Molecular Editor & Builder

Jamberoo 11

:: DESCRIPTION

Jamberoo (former JMolEditor) is a program for displaying, analyzing, editing, converting, and animating molecular systems.

::DEVELOPER

Dr. Vladislav Vasilyev

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Mac / Linux
Java
java3d

:: DOWNLOAD

Jamberoo

:: MORE INFORMATION