:: DESCRIPTION
GIGI-Check is a C++ program to detect Mendelian consistent genotyping errors of dense markers in pedigree data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Cheung, CYK., Thompson, E.A., Wijsman, E.M. (2014)
Detection of Mendelian Consistent Genotyping Errors in Pedigrees.
Genetic Epidemiology 38(4):291-299
:: DESCRIPTION
SCALCE is a tool for compressing FASTQ files.
::DEVELOPER
Lab for Computational Biology at SFU
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Dec 1;28(23):3051-7. doi: 10.1093/bioinformatics/bts593. Epub 2012 Oct 9.
SCALCE: boosting sequence compression algorithms using locally consistent encoding.
Hach F1, Numanagic I, Alkan C, Sahinalp SC.
:: DESCRIPTION
ACANA (ACcurate ANchoring Alignment)) is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to combine the best of local and global alignments algorithms in searching for evolutionarily related regions of sequences in order to achieve the best alignment. ACANA is also robust to the small changes of alignment parameters, particularly the gap extension score. As an accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved functional regulatory elements.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Weichun Huang, David M. Umbach, and Leping Li,
Accurate anchoring alignment of divergent sequences.
Bioinformatics 22:29-34, Jan 1 2006
