MEDICC

:: DESCRIPTION

MEDICC harnesses the power of a finite-state automaton representation of genomic profiles to model genomic rearrangement events with horizontal dependencies.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX / Windows

Python

:: DOWNLOAD

:: MORE INFORMATION

Citation

Phylogenetic quantification of intra-tumour heterogeneity.
Schwarz RF, Trinh A, Sipos B, Brenton JD, Goldman N, Markowetz F.
PLoS Comput Biol. 2014 Apr 17;10(4):e1003535. doi: 10.1371/journal.pcbi.1003535

SNPduo 1.02a

:: DESCRIPTION

SNPduo is designed to provide an analysis of Single Nucleotide Polymorphism (SNP) data between any two individuals. It has been designed based on data exported from Affymetrix CNAT 4.0 or Illumina Beadstudio, as well as data downloaded from the HapMap project. However, provided that the data is formatted correctly SNPduoWeb can analyze any SNP data.

::DEVELOPER

the Pevsner Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
R package
Apache
Perl

:: DOWNLOAD

SNPduo

:: MORE INFORMATION

Citation

PLoS One. 2009 Aug 21;4(8):e6711. doi: 10.1371/journal.pone.0006711.
Visualization of shared genomic regions and meiotic recombination in high-density SNP data.
Roberson ED, Pevsner J.

Tag: Comparisons

MEDICC – Minimum Event Distance for Intra-tumour Copy number Comparisons

MEDICC

SNPduo 1.02a – Pairwise Comparisons of SNP data sets

SNPduo 1.02a