CAPITAL is a computational method for comparing pseudotime trajectories with tree alignment whereby trajectories including branchings can be automatically compared.
The CAMBerVis software is a tool to visualize inconsistencies in genome structure annotations among bacterial strains. It is based on the idea introduced by CAMBer.
CAMBer unifies annotations of closely related species by homology transfer. It produces what we called multigene families. Each multigene family reveals genes that are in one-to-one correspondence in the bacterial strains, thereby permitting their annotations to be integrated. In our paper we present more details and results of our method applied to three human pathogens: Escherichia coli, Mycobacterium tuberculosis and Staphylococcus aureus.