Morgan2McClintock 3.0 – Predicting Chromosomal Locations of Genetically Mapped Loci in Maize

Morgan2McClintock 3.0

:: DESCRIPTION

The Morgan2McClintock Translator permits prediction of meiotic pachytene chromosome map positions from recombination-based linkage data using recombination nodule frequency distributions.This tool uses the maize Recombination Nodule map (Anderson et al. 2003 and 2004) to calculate approximate chromosomal positions for loci given a genetic map for a single chromosome.

::DEVELOPER

Lawrence-Dill Plant Informatics and Computation Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Php

:: DOWNLOAD

 Morgan2McClintock

:: MORE INFORMATION

Citation

Genetics. 2006 Mar;172(3):2007-9. Epub 2005 Dec 30.
Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator.
Lawrence CJ1, Seigfried TE, Bass HW, Anderson LK.

generate_oriented_clusters – Single-linkage Clustering of Chromosomal Locations

generate_oriented_clusters

:: DESCRIPTION

generate_oriented_clusters” is a program that generates single-linkage clusters of loci (where a locus can be on a chromosome, transcript, etc.).

::DEVELOPER

Zavolan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 generate_oriented_clusters

:: MORE INFORMATION

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