:: DESCRIPTION
TileHMM is an R package designed for the analysis of ChIP-chip data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2008 Aug 18;9:343. doi: 10.1186/1471-2105-9-343.
Parameter estimation for robust HMM analysis of ChIP-chip data.
Humburg P1, Bulger D, Stone G.
:: DESCRIPTION
MDScan (Motif Discovery scan) discovers conserved transcription factor binding sites among upstream sequences from chromatin immune precipitation experiments (CHIP) as well as from single microarray experiments. The algorithm is strictly deterministic, not discovering local minima and always giving the globally best conserved motif. It is faster than most other algorithms and nearly as sensitive as BioProspector.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Liu XS, Brutlag DL, Liu JS.
An algorithm for finding protein-DNA binding sites with applications to chromatin immunoprecipitation microarray experiments.
Nat Biotechnol. 2002 20(8):835-9.
