CCH 20141012
:: DESCRIPTION
CCH (Combinatorial Conflicting Homozygosity) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/ Linux/ MacOsX
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Combinatorial Conflicting Homozygosity (CCH) analysis enables the rapid identification of shared genomic regions in the presence of multiple phenocopies.
Levine AP, Connor TM, Oygar DD, Neild GH, Segal AW, Maxwell PH, Gale DP.
BMC Genomics. 2015 Mar 10;16:163. doi: 10.1186/s12864-015-1360-4.