Tag: C/C++ Library

PLINK/SEQ 0.10 – C/C++ Library for Analysis of Genetic Variation Data

PLINK/SEQ 0.10

:: DESCRIPTION

PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing projects, particularly whole-exome and whole-genome studies. However, the library could in principle be applied to other types of genetic studies, including whole-genome association studies of common SNPs.

::DEVELOPER

Rivas Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 PLINK/SEQ

:: MORE INFORMATION

SSW – SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications

SSW

:: DESCRIPTION

SSW (Striped-Smith-Waterman-Library) is a fast implementation of the Smith-Waterman algorithm whose API that can be flexibly used by programs written in C, C++ and other languages.

::DEVELOPER

The MarthLab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C/C++ Compiler

:: DOWNLOAD

 SSW

:: MORE INFORMATION

Citation

SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
Mengyao Zhao, Wan-Ping Lee, Erik Garrison, Gabor T. Marth
PLoS One. 2013 Dec 4;8(12):e82138. doi: 10.1371/journal.pone.0082138.

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