:: DESCRIPTION
L1pred is a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier
::DEVELOPER
System Biology Laboratory Of Chi Zhang
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2012;7(4):e35666. doi: 10.1371/journal.pone.0035666. Epub 2012 Apr 27.
L1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier.
Dou Y1, Wang J, Yang J, Zhang C.
:: DESCRIPTION
The MEPI is a web server to predict catalytic residues from protein structures, which integrates the Micro-Environment(ME) and Position Information of each residue.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
PLoS One. 2012;7(7):e41370. doi: 10.1371/journal.pone.0041370. Epub 2012 Jul 19.
Identification of catalytic residues using a novel feature that integrates the microenvironment and geometrical location properties of residues.
Han L1, Zhang YJ, Song J, Liu MS, Zhang Z.
:: DESCRIPTION
Discern is a method for catalytic residue prediction derived from the combination of three ingredients: the use of the INTREPID phylogenomic method to extract conservation information; the use of 3D structure data, including features computed for residues that are proximal in the structure; and a statistical regularization procedure to prevent overfitting.
::DEVELOPER
the Berkeley Phylogenomics Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sankararaman, S., Sha, F., Kirsch, J.F., Jordan, M.I., and Sjölander, K.,
Active Site Prediction using Evolutionary and Structural Information
Bioinformatics (2010) 26 (5): 617-624.; doi: 10.1093/bioinformatics/btq008
