:: DESCRIPTION
Wasabi is a tool for visualisation and manipulation of rich MSAs and a graphical interface to command-line programs.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Wasabi: An Integrated Platform for Evolutionary Sequence Analysis and Data Visualization.
Veidenberg A, Medlar A, Löytynoja A.
Mol Biol Evol. 2016 Apr;33(4):1126-30. doi: 10.1093/molbev/msv333.
:: DESCRIPTION
ABrowse is an open source genome browser framework for not only end users, but also data providers and developers. Powered by cutting-edge technologies, ABrowse provides a rather comprehensive set of features as a modern next-generation genome browser framework
::DEVELOPER
Gao Lab, Peking University.
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kong L, Wang J, Zhao S, Gu X, Luo J, Gao G.
ABrowse–a customizable next-generation genome browser framework.
BMC Bioinformatics. 2012 Jan 5;13:2. doi: 10.1186/1471-2105-13-2. PMID: 22222089; PMCID: PMC3265404.
:: DESCRIPTION
Insyght is a browser that helps navigate among abundant homologies, syntenies and genes annotations.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.
Lacroix T, Thérond S, Rugeri M, Nicolas P, Gendrault A, Loux V, Gibrat JF.
Bioinformatics. 2015 Nov 24. pii: btv689.
:: DESCRIPTION
SVGenes (bio-svgenes) is a Ruby-language library that uses SVG primitives to render typical genomic glyphs through a simple and flexible Ruby interface.
::DEVELOPER
Team MacLean – Bioinformatics @ The Sainsbury Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Aug 1;29(15):1890-2. doi: 10.1093/bioinformatics/btt294. Epub 2013 Jun 6.
SVGenes: a library for rendering genomic features in scalable vector graphic format.
Etherington GJ1, MacLean D.
:: DESCRIPTION
MEME-LaB (MEME Launcher and Browser) provides an interface to run MEME on a range of gene clusters and browse the resulting motifs
::DEVELOPER
Warwick Systems Biology Centre
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Jul 1;29(13):1696-7. doi: 10.1093/bioinformatics/btt248. Epub 2013 May 16.
MEME-LaB: motif analysis in clusters.
Brown P, Baxter L, Hickman R, Beynon J, Moore JD, Ott S.
:: DESCRIPTION
Aequatus is an open-source web-based tool to visualise homologous gene structures among differing species or subtypes of a common species.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Aequatus: an open-source homology browser.
Thanki AS, Soranzo N, Herrero J, Haerty W, Davey RP.
Gigascience. 2018 Nov 1;7(11). doi: 10.1093/gigascience/giy128.
:: DESCRIPTION
RPAN is a genome browser to search and visualize the rice pan-genome derived from 3K RGP. RPAN contains a database of the basic information of 3010 rice accessions, including genomic sequences, gene annotations, PAV information and gene expression data of the rice pan-genome. At least 12 000 novel genes absent in the reference genome were included. RPAN also provides multiple search and visualization functions. RPAN can be a rich resource for rice biology and rice breeding.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2017 Jan 25;45(2):597-605. doi: 10.1093/nar/gkw958. Epub 2016 Dec 10.
RPAN: rice pan-genome browser for ～3000 rice genomes.
Sun C et al.
:: DESCRIPTION
MochiView is Java software that integrates browsing of genomic sequences, features, and data with DNA motif visualization and analysis
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Oliver R Homann and Alexander D Johnson
MochiView: versatile software for genome browsing and DNA motif analysis
BMC Biology 2010, 8:49
:: DESCRIPTION
Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA and Barrell B
Artemis: sequence visualization and annotation.
Bioinformatics (Oxford, England) 2000;16;10;944-5
:: DESCRIPTION
VGO (Viral Genome Organizer) is an easy-to-use Java genome browser. It can be used to display information about a genome, including its genes, ORFs and start/stop codons. It can also be used to perform a regular expression search, a fuzzy motif search, and a masslist search. Because VGO talks to our database of genome sequences (VOCs) it can be used to compare genomes.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Lefkowitz, E. J., Upton, C., Changayil, S. S., Buck, C., Traktman, P., Buller, R. M. L. 2005.
Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource. Nucleic Acids Res. 2005 33: p. D311-D316
C. Upton, D. Hogg, D. Perrin, M. Boone and N. Harris, 2001.
Viral Genome Organizer: A system for analyzing complete viral genomes. Virus Research 70, 55-64.
