:: DESCRIPTION
GSdesign optimizes breeding programs for maximum genetic gain.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Jeffrey B. Endelman, Gary N. Atlin, Yoseph Beyene, Kassa Semagn, Xuecai Zhang, Mark E. Sorrells and Jean-Luc Jannink
Optimal Design of Preliminary Yield Trials with Genome-Wide Markers
Crop Science Vol. 54 No. 1, p. 48-59,doi:10.2135/cropsci2013.03.0154
:: DESCRIPTION
AlphaSimR is the successor to the AlphaSim software for breeding program simulation and a package for the R software environment. AlphaSimR builds on lessons learned from development of our previous software and the use of this software to perform simulations of breeding programs. The result is a software package this is both easy-to-use and flexible. This ease-of-use and flexibility provides users with the ability to simulate a wide range of complex plant and animal breeding programs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gaynor RC, Gorjanc G, Hickey JM.
AlphaSimR: an R package for breeding program simulations.
G3 (Bethesda). 2021 Feb 9;11(2):jkaa017. doi: 10.1093/g3journal/jkaa017. PMID: 33704430; PMCID: PMC8022926.
:: DESCRIPTION
AlphaPlantImpute is a software package designed for phasing and imputing genotype data in plant breeding populations. AlphaPlantImpute can be implemented within and across bi-parental populations to phase and impute focal individuals genotyped at low-density to high-density. Focal individuals can be descendants of a bi-parental cross at various levels of selfing or can be parents of one or more bi-parental populations. All information on the model of analysis, input files and their layout, is specified in a single parameter file.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gonen S, Wimmer V, Gaynor RC, Byrne E, Gorjanc G, Hickey JM.
A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations.
Theor Appl Genet. 2018 Nov;131(11):2345-2357. doi: 10.1007/s00122-018-3156-9. Epub 2018 Aug 4. PMID: 30078163; PMCID: PMC6208939.
