ASA3P v1.3.0

:: DESCRIPTION

ASA3P is an automatic and highly scalable assembly, annotation and higher-level analyses pipeline for closely related bacterial isolates.

::DEVELOPER

Bioinformatics and Systems Biology, Justus-Liebig-University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Docker / OpenStack

:: DOWNLOAD

ASA3P

:: MORE INFORMATION

Citation

Schwengers O, Hoek A, Fritzenwanker M, Falgenhauer L, Hain T, Chakraborty T, Goesmann A.
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates.
PLoS Comput Biol. 2020 Mar 5;16(3):e1007134. doi: 10.1371/journal.pcbi.1007134. PMID: 32134915; PMCID: PMC7077848.

BIGSdb 1.31.5

:: DESCRIPTION

BIGSdb is software designed to store and analyse sequence data for bacterial isolates. Any number of sequences can be linked to isolate records – these can be small contigs assembled from dideoxy sequencing through to whole genomes (complete or multiple contigs generated from parallel sequencing technologies such as 454 or Illumina Solexa).

::DEVELOPER

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX

Perl

SQL Server

:: DOWNLOAD

:: MORE INFORMATION

Citation

Tag: Bacterial Isolate

ASA3P v1.3.0 – Automatic Bacterial Isolate Assembly, Annotation and Analyses Pipeline

ASA3P v1.3.0

BIGSdb 1.31.5 – Bacterial Isolate Genome Sequence Database

BIGSdb 1.31.5