Quikr 1.0.4
:: DESCRIPTION
Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data).
::DEVELOPER
Mathematical Biosciences Institute, The Ohio State University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/MacOsX
- Python
- BioPython
:: DOWNLOAD
:: MORE INFORMATION
Citation
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.
Koslicki D, Foucart S, Rosen G.
Bioinformatics. 2013 Sep 1;29(17):2096-102. doi: 10.1093/bioinformatics/btt336.