:: DESCRIPTION
PMAG is an adjacency-based method in the probabilistic framework to infer ancestral gene orders.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2014 Oct 10;9(10):e108796. doi: 10.1371/journal.pone.0108796. eCollection 2014.
Reconstruction of ancestral gene orders using probabilistic and gene encoding approaches.
Yang N, Hu F, Zhou L, Tang J
:: DESCRIPTION
ProCARs is a program used to reconstruct Ancestral gene orders as CARs (Contiguous Ancestral Regions) with a progressive homology-based method. The method runs from a phylogeny tree (without branch lengths needed) with a marked ancestor and a block file.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Perrin A, Varré JS, Blanquart S, Ouangraoua A.
ProCARs: Progressive Reconstruction of Ancestral Gene Orders.
BMC Genomics. 2015;16 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-16-S5-S6. Epub 2015 May 26. PMID: 26040958; PMCID: PMC4460626.
:: DESCRIPTION
ANCESCON is a package for distance-based phylogenetic inference and reconstruction of ancestral protein sequences that takes into account the observed variation of evolutionary rates between positions that more precisely describes the evolution of protein families.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
W.Cai, J.Pei, and N.V.Grishin (2004)
“Reconstruction of ancestral protein sequences and its applications“.
BMC Evolutionary Biology 4(1): 33
